All functions

CA_NS6

MOD13A1 EVI observations at flux site CA-NS6

FitDL.Zhang() FitDL.AG() FitDL.AG2() FitDL.Beck() FitDL.Elmore() FitDL.Gu() FitDL.Klos()

Fine fitting

GOF()

GOF

MOD13A1

MOD13A1

PhenoDeriv()

Phenology extraction in Derivative method (DER)

PhenoGu()

Phenology extraction in GU method (GU)

PhenoKl()

Phenology extraction in Inflection method (Zhang)

PhenoTrs()

Phenology extraction in Threshold method (TRS)

check_input()

check_input

check_ylu()

check_ylu

curvefit()

Fine curve fitting

curvefits()

Fine Curve fitting

curvefits_LocalModel() merge_LocalModels()

curvefits by local model functions of TIMESAT

f_goal()

Goal function of fine curve fitting methods

findpeaks()

findpeaks

get_GOF()

get_GOF

get_fitting()

getFittings

get_param()

Get parameters from curve fitting result

get_pheno()

get_pheno

input_single

input object with one growing season per year

Logistic() doubleLog.Zhang() doubleLog.AG() doubleLog.AG2() doubleLog.Beck() doubleLog.Elmore() doubleLog.Gu() doubleLog.Klos()

Fine fitting functions

movmean()

movmean

opt_ucminf() opt_nlm() opt_optim() opt_nlminb()

Unified optimization function

optim_pheno()

optim_pheno

plot_curvefits()

plot_curvefits

plot_input()

Plot INPUT returned by check_input

plot_season()

plot_season

getBits() qc_summary() qc_StateQA() qc_FparLai() qc_5l() qc_NDVIv4() qc_NDVI3g() qc_SPOT()

Initial weights according to qc

qc_sentinel2()

Initial weights for sentinel2 according to SCL band

rcpp_wSG() rcpp_SG()

Weighted Savitzky-Golay written in RcppArmadillo

season_mov()

Moving growing season division

set_options() get_options()

set and get phenofit option

smooth_wHANTS()

Weighted HANTS SMOOTH

smooth_wSG()

Weighted Savitzky-Golay

smooth_wWHIT()

Weigthed Whittaker Smoother

wSELF() wTSM() wBisquare0() wBisquare() wChen() wKong()

Weight updating functions

whit2()

Weighted Whittaker smoothing with a second order finite difference penalty